Injibara University, since its establishment, has expanded its academic programs. It started its operation with 22 undergraduate programs under four colleges in 2018. Then, it added two undergraduate programs in 2019 which it takes until the end of 2020. In 2021, it increased its undergraduate programs to 46 and newly opened 13 postgraduate programs. Since 2022, after the University Board approved more programs, there are now 58 undergraduate programs. These programs are comprised under seven colleges and one school. The following table shows the list of active undergraduate programs in Injibara University.
List of Undergraduate Programs in Injibara University
| College | No. | Program |
| Agriculture, Food and Climate Sciences | 1 | Agri-business and Value Chain Management |
| 2 | Agricultural Economics | |
| 3 | Animal Science | |
| 4 | Food Science and Post–harvest Technology | |
| 5 | Forestry | |
| 6 | Horticulture | |
| 7 | Natural Resource Management | |
| 8 | Plant Science | |
| 9 | Rural Development and Agricultural Extension | |
| 10 | Veterinary Laboratory Technology | |
| Business and Economics | 1 | Accounting and Finance |
| 2 | Economics | |
| 3 | Management | |
| 4 | Marketing Management | |
| 5 | Public Administration and Development Management | |
| 6 | Tourism and Hotel Management | |
| Education and Behavioral Sciences | 1 | Early Child Care and Education |
| 2 | Educational Planning and Management | |
| 3 | Life Long Learning and Community Development | |
| 4 | Psychology | |
| 5 | Special Needs and Inclusive Education | |
| 6 | Teacher Education Curriculum Studies | |
| Engineering and Technology | 1 | Civil Engineering |
| 2 | Computer Science | |
| 3 | Electrical and Computer Engineering | |
| 4 | Hydraulic and Water Resource Engineering | |
| 5 | Information System | |
| 6 | Information Technology | |
| 7 | Software Engineering | |
| Medicine and Health Sciences | 1 | Anesthesia |
| 2 | Environmental Health | |
| 3 | Medical Laboratory Science | |
| 4 | Medicine | |
| 5 | Midwifery | |
| 6 | Nursing | |
| 7 | Pediatrics and Child Health Nursing | |
| 8 | Pharmacy | |
| 9 | Psychiatry | |
| Natural and Computational Sciences | 1 | Biology |
| 2 | Biotechnology | |
| 3 | Chemistry | |
| 4 | Geology | |
| 5 | Mathematics | |
| 6 | Physics | |
| 7 | Sport Science | |
| 8 | Statistics | |
| Social Science and Humanities | 1 | Civics and Ethical Studies |
| 2 | English Language and Literature | |
| 3 | Ethiopian Languages and Literature-Amharic | |
| 4 | Ethiopian Languages and Literature-Awgni | |
| 5 | Geography and Environmental Studies | |
| 6 | History and Heritage Management | |
| 7 | Journalism and Communications | |
| 8 | Land Administration and Surveying | |
| 9 | Political Science and International Relations | |
| 10 | Social Anthropology | |
| 11 | Sociology | |
| School of Law | 1 | Law |
| Total = 58 UG Programs | ||